Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEDQKHPFFEPKKETDGLEFKDAKEMTVEEAVRKDSEIKAGITEEDSILDKYIKQHRDEVASQKFETKSSDFANLDTASLDDFIKKQREELSAMLAAEELSKKLDNSVSQEQDTEANAVSPKEESSQEQENSVTPVPPLNTEAEPTATEPDSTIADSEEYKSSSKKRGGIVGTLIALI-----LLLIVAIFGYNYFKNNNSTNSQTATSQSSSSKATTTS--SEEDKKASQNLDNFNK-SYANFFVDDKKTQL------KNSEFDKLSELEKKVDALKG-----TKYYGKVKVKFDSLKRQIDAVKAVNDKFKSPAVVDGKKSEKLEVKDGANFDSLDSKTLNTGNASLDSLLHSIVSTGRNQVKQSEEQASSNKVSDTQITEQPNVTNGQSSSSAATINNQAAGTASGNLERNRSRVPYNNAAIADTGNPAWIFNPGVLEKIVATSQARGYFSGNNYILEPVNIINGNGYYNMFKLDGTYLFSINAKTGYFVGNAPGRADSLDY |
| 1CII Chain:A ((176-474)) | -----------PREARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRL--------SELEKNGGAALAVLDAQQARLLGQQTRNDRAISEARNKLS-----SVTESLNTARNALTRAEQQLTQQKNT----PDGKTIVSPEKFPGRSSTNDSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRADINKKINAKDRAAIAAALESVKLSDISSNLNRFSRGLGYAGKFTSLADWITEFGKAVRTENWRPLFVKTETIIAGNAATALVALVFSILTGSALGIIGYGLLMAVTGALIDESLVEKANKFW----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CII.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 102322 for 1582 contacts (64.7/contact) +
2D Compatibility (PS) -29612 + (NN) -8103 + (LL) 2644
1D Compatibility (HY) 400 + (ID) 3400
Total energy: 64251.0 ( 40.61 by residue)
QMean score : 0.221
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