Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKIKIVLVDDHEMVRLGLKSFLNLQADVEVIGEASNGLEGIKKALELRPDVVVMDLVMPEMDGVEATLALLKDWPEAAILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIRKVARGEQAIENEVDKKIKAHDKCPA-LHEGLTARERDILNLLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLVPQDDE
4IF4 Chain:A ((2-207))
---IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ----
General information:
TITO was launched using:
RESULT:
Template:
4IF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128343 for 1578 contacts (-81.3/contact) +
2D Compatibility (PS) -21794 + (NN) -9122 + (LL) 24
1D Compatibility (HY) -22000 + (ID) 5600
Total energy: -186835.0 ( -118.40 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_4IF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IF4-query.scw
PDB file :
Tito_Scwrl_4IF4.pdb
: