Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDIKEIREALPHRYPMLLVDRVLEVSE--DEIVAIKNVSINEPFFNGHFPEYPVMPGVLIMEALAQTAGVLELSKEE---NKGKLVFYAGMDKVKFKKQVVPGDQLVMTAKFVKRRGTIAVVEAIAEVDGKLAASGTLTFAIGN
1U1Z Chain:A ((21-164))
MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKMLDVKP---TLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEIICAERK
General information:
TITO was launched using:
RESULT:
Template:
1U1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104172 for 1022 contacts (-101.9/contact) +
2D Compatibility (PS) -14595 + (NN) -2770 + (LL) -188
1D Compatibility (HY) -15600 + (ID) 3650
Total energy: -140975.0 ( -137.94 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_1U1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U1Z-query.scw
PDB file :
Tito_Scwrl_1U1Z.pdb
: