Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKVVFLKILVPLVSLVFLISLGITILAGVLGAVGGSQSNCTIEVVTSTSTDSSISSGDGSIDSFVKEHKEAYILSWKAGGFLPSASITQTMIENGFNFTNPNGTSLWQAHNMGGVKTSSKSNFPVTLATYGQDSVDLSGTKPGARVGDGTGGAYTWFSSYDAGIVGKAEFMAHQTLYTKAINNIDGIATLSAIADGGWATDGTYKTKLIDMYHKLGKTYEWLDKEAISAHGDKPYKATTASAGDAGLSDIFTSNSKDCSDSSSGGATDGTGTVPADAIAWGYRPDNLPESLKQYIIDPKSLGMAYANSSGWFNPGSDYLAGQCVNLTISLGNHLWGHSGSVSGNGKDQAGAWANIFGNSVKTTPKRGAIFSTQNGGGGYGHTGIVCHVFENGSILIVEQNTPLSGADYFKKSYTWNYRIW-TPAQQKAEVISFAYPYGKEPKLGN |
4CGK Chain:A ((284-390)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASSYPIGECTWGVKTLAP--W--AGDYWGNGAQWATS-AAAAGFRTGSTPQVGAIACWNDGG--YGHVAVVTAVESTTRIQVSESN-------YAGNRTIGNHRGWFNPTTTSEGFVTYIYAD-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CGK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16676 for 838 contacts (-19.9/contact) +
2D Compatibility (PS) -11779 + (NN) -8476 + (LL) 13516
1D Compatibility (HY) -400 + (ID) 1700
Total energy: -25515.0 ( -30.45 by residue)
QMean score : 0.410
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