Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVRKRKGAEEHLENNPHYVISNPEEAKGRWHEIFGNNNPIHIEVGSGKGAFITGMAEQNPDINYIGIDIQLSVLSYALDKVLDSGAKNIKLLLVDGSSLSNYFDTGEVDLMYLNFSDPWPKKKHEKRRLTYKTFLDTYKDILPEQGEIHFKTDNRGLFEYSLASFSQYGMTLKQVWLDLHASDYQQNIMTEYERKFSNKGQVIYRVEARF
1YZH Chain:A ((11-214))
-------GATELLEANPQYVVLNPLEAKAKWRDLFGNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYEQKFSNKGQVIYRVEAEF
General information:
TITO was launched using:
RESULT:
Template:
1YZH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104968 for 1615 contacts (-65.0/contact) +
2D Compatibility (PS) -22342 + (NN) -11562 + (LL) 828
1D Compatibility (HY) -26800 + (ID) 7950
Total energy: -172794.0 ( -106.99 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_1YZH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YZH-query.scw
PDB file :
Tito_Scwrl_1YZH.pdb
: