Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTVKVVYFSSKSNNTHRFVQKLAWSNQRIP-SDGSNILVTEDYILIVPTYAGGGDDTKGAVPKQVVQFLNVRQNREHCQGVISSGNTNFGDTYAIAGPIIARKLNVPLLHQFELLGTQEDVTRVKELLCQFTRKDK
3N3B Chain:D ((23-151))
-----QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGG--TAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQR--
General information:
TITO was launched using:
RESULT:
Template:
3N3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94226 for 931 contacts (-101.2/contact) +
2D Compatibility (PS) -14003 + (NN) -7809 + (LL) 184
1D Compatibility (HY) -14000 + (ID) 3350
Total energy: -133204.0 ( -143.08 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_3N3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N3B-query.scw
PDB file :
Tito_Scwrl_3N3B.pdb
: