Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRIKPNKKRELLKAKGINWKDVRLSQTLQEVASPKKKAPEAPKAVDLLEGLTANKQDVLKEAGLVSLEAFAKVSEADVLALKGIGPAAIKQLVDNGVVFAK
3GQC Chain:A ((644-691))
--------------------------------------------QLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKE--FGPKTGQML---------
General information:
TITO was launched using:
RESULT:
Template:
3GQC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27937 for 299 contacts (-93.4/contact) +
2D Compatibility (PS) -5092 + (NN) -1788 + (LL) 3580
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -33687.0 ( -112.67 by residue)
QMean score : 0.758
(partial model without unconserved sides chains):
PDB file :
Tito_3GQC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GQC-query.scw
PDB file :
Tito_Scwrl_3GQC.pdb
: