Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKALFTGSFDPVTNGHLDIIERASYLFDHVYIGLFYNLEKQGYFSIECRKKMLEEAIRQFKNVSVLVAQD-RLAVDLAREVGAKYFVRGLRNSQDFDYEANLEFFNKQLADDIETVYLSTSPSLSPISSSRIRELIYFKASVKPFVPKSVVREVEKMSEE
3ND5 Chain:A ((1-158))
MRKIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFI------LFTPEEKKYLIEEATKEMPNVRVI-MQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQK---
General information:
TITO was launched using:
RESULT:
Template:
3ND5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98520 for 1140 contacts (-86.4/contact) +
2D Compatibility (PS) -16163 + (NN) -5439 + (LL) 584
1D Compatibility (HY) -17600 + (ID) 3100
Total energy: -140238.0 ( -123.02 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3ND5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ND5-query.scw
PDB file :
Tito_Scwrl_3ND5.pdb
: