Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRLVKIVTIIRNNKIRTLIFVMGSLILLFPIVSQVSYYLASHQNINQFKREVAKIDTNTVERRIALANAYNETLSRNPLLIDPFTSKQKEGLREYARMLEVHEQIGHVAIPSIGVDIPIYAGTSETVLQKGSGHLEGTSLPVGGLSTHSVLTAHRGLPTARLFTDLNKVKKGQIFYVTNIKETLAYKVVSIKVVDPTALSEVKIVNGKDYITLLTCTPYMINSHRLLVKGERIPYDSTEAEKHKEQTVQDYRLSLVLKILLVLLIGLFIVIMMRRWMQHRQ
4G1H Chain:A ((16-195))
--------------------------------------------------------IDTNTVERRIALANAYNETLSRNPLLIDPFTSK----LREYARMLEVHEQIGHVAIPSIGVDIPIYAGTSETVLQKGSGHLEGTSLPVGGLSTHSVLTAHRGLPTARLFTDLNKVKKGQIFYVTNIKETLAYKVVSIKVVDPTALSEVKIVNGKDYITLLTCTPYMINSHRLLVKGERIP-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4G1H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106121 for 1418 contacts (-74.8/contact) +
2D Compatibility (PS) -18832 + (NN) -5534 + (LL) 11320
1D Compatibility (HY) -25600 + (ID) 8800
Total energy: -153567.0 ( -108.30 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_4G1H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G1H-query.scw
PDB file :
Tito_Scwrl_4G1H.pdb
: