Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIAIPAFALSVLSGQFIGQKLADSLVYQASRTVRADFMKGFGNMQLGSDSDTDMFMQTKCTSEA
1ZTD Chain:A ((18-45))
---LYSLALTEFLGKPTGDRVPNASLAIALELTGLSKNLRRVDKHAKGDYAEALIAKAWLMGLI
General information:
TITO was launched using:
RESULT:
Template:
1ZTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5007 for 116 contacts (-43.2/contact) +
2D Compatibility (PS) -2889 + (NN) -709 + (LL) 556
1D Compatibility (HY) -400 + (ID) 250
Total energy: -8699.0 ( -74.99 by residue)
QMean score : -0.069
(partial model without unconserved sides chains):
PDB file :
Tito_1ZTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZTD-query.scw
PDB file :
Tito_Scwrl_1ZTD.pdb
: