Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFELKNIAYRYKGNDN--KTLENINYSFQSGVFYTILGNSDSGKTTLLSLMAGLDSPTEGQVLFNK---KDIKEAGYAQHRKKNIALVFQNYNLLDYLTPLENVQLVKPTADK---------------QLLLDLGLKEDMLTRNILRLSGGQQQRVAIARALVAGTPAILLDEPTGNLDFDIARDITMRLKDFAHKEKRCVIMVTHSREIAHMADTALQLTGDNLKELSKESIAQSILQQRNL
3TIF Chain:B ((1-218))
MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF---------
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132822 for 1591 contacts (-83.5/contact) +
2D Compatibility (PS) -21844 + (NN) -12211 + (LL) 472
1D Compatibility (HY) -17600 + (ID) 3900
Total energy: -187905.0 ( -118.10 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: