Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLNADVNVKAYVQNTIDNQQRPSTANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGHLIAYALAGNFKGWDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNVAIPNTQASYTMDYATGEITLN
4QH0 Chain:D ((6-225))
-----------------------------------------SSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLNADVNVKAYVQNTIDNQQRPSTANAMLDRTIRQYQNR-------ANWKPLGWHQVATNDHYGHAVDKGALIAYALAGNFKGWDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNVAIPNTQASYTMDYATGEITLN
General information:
TITO was launched using:
RESULT:
Template:
4QH0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38915 for 1771 contacts (-22.0/contact) +
2D Compatibility (PS) -22824 + (NN) -7563 + (LL) 3360
1D Compatibility (HY) -24400 + (ID) 10600
Total energy: -100942.0 ( -57.00 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_4QH0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QH0-query.scw
PDB file :
Tito_Scwrl_4QH0.pdb
: