Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEIAVLIIAIAFVVLVLGILFVLKKVSETIEETKQTIKVLTSDVNVTLYQTNEILAKANVLVDDVNGKVSTIDPLFVAIADLSESVSDLNLQA--RHIGQKASSATSSVTKAGSALAIG---------KAASKIFRKKGDKK
4C5J Chain:A ((83-168))
---------------------------------------------------TEEIIKRAGEVYEASNAQYFVVDPVMVCKGE-DEVLNPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHV
General information:
TITO was launched using:
RESULT:
Template:
4C5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5722 for 460 contacts (12.4/contact) +
2D Compatibility (PS) -8184 + (NN) -3023 + (LL) 6552
1D Compatibility (HY) -3600 + (ID) 1150
Total energy: -3683.0 ( -8.01 by residue)
QMean score : 0.188
(partial model without unconserved sides chains):
PDB file :
Tito_4C5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C5J-query.scw
PDB file :
Tito_Scwrl_4C5J.pdb
: