Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIWTNLGRFAFIETEHVNLRPVAYTDREAFWRIASKRTNLQFIFPVQTSKKESDFLLVHSFM---KEPLGVWAIEDKVSHKMFGVIRFENIDLSKKTAEIGYFLKESSWGQGIMTECLKTLSFFAFQEFGMDKLIIVTHKENIASQKVALKAHFKQSRSFKGSDRYTRRIRDYIEFQLTRGDYRYE
1S7K Chain:A ((3-178))
---------EIIPVSTTLELRAADESHVPALHQLVLKN---------------TRKHVQGNILLHQRGYAKMYLIF--CQNEMAGVLSFNAIEPINKAAYIGYWLDESFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAEYLNGDYHDVNMYARIIDAD---
General information:
TITO was launched using:
RESULT:
Template:
1S7K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75520 for 1108 contacts (-68.2/contact) +
2D Compatibility (PS) -16680 + (NN) -6233 + (LL) 2004
1D Compatibility (HY) -5600 + (ID) 1750
Total energy: -103779.0 ( -93.66 by residue)
QMean score : 0.371
(partial model without unconserved sides chains):
PDB file :
Tito_1S7K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S7K-query.scw
PDB file :
Tito_Scwrl_1S7K.pdb
: