Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRHADADILKRHYAELTDRPFFPTLVDYMTSGPVIIEVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
3VVT Chain:A ((1-133))
MERTFVMIKPDGVQRGLIGEIISRFERKGLKIVAMKMMRISREMAEKHYAEHREKPFFSALVDYITSGPVVAMVLEGKNAVEVVRKMVGATNPKEAAPGTIRGDFGL-----DVGKNVIHASDSPESAEREISLFFKD
General information:
TITO was launched using:
RESULT:
Template:
3VVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78955 for 1019 contacts (-77.5/contact) +
2D Compatibility (PS) -14053 + (NN) -3850 + (LL) -244
1D Compatibility (HY) -13200 + (ID) 3500
Total energy: -113802.0 ( -111.68 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_3VVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VVT-query.scw
PDB file :
Tito_Scwrl_3VVT.pdb
: