Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKKLHGFFNFVRWLLVVLLIIVGLALVFNKPIRNAFIAHQSNHYQISRVSKKTIEKNKKSKTSYDFSSVKSISTESILSAQTKSHNLPVIGGIAIPDVEINLPIFKGLGNTELSYGAGTMKENQIMGGQNNYALASHHVFGLTGSSKMLFSPLEHAKKGMKVYLTDKSKVYTYTITEISKVTPEHVEVIDDTPGKSQLTLVTCTDPEATERIIVHAELEKTGEFSTADESILKAFSKKYNQINL
3FN7 Chain:A ((81-248))
------------------------------------------------------------------------------SVLQAQMAAQQLPVIGGIAIPELGINLPIFKGLGNTELIYGAGTMKEEQVMGGENNYSLASHHIFGITGSSQMLFSPLERAQNGMSIYLTDKEKIYEYIIKDVFTVAPERVDVIDDTAGLKEVTLVTCTDIEATERIIVKGELKTEYDFDKAPADVLKAFNHSYNQVST
General information:
TITO was launched using:
RESULT:
Template:
3FN7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97785 for 1333 contacts (-73.4/contact) +
2D Compatibility (PS) -18461 + (NN) -9208 + (LL) 6324
1D Compatibility (HY) -21600 + (ID) 5450
Total energy: -146180.0 ( -109.66 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_3FN7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FN7-query.scw
PDB file :
Tito_Scwrl_3FN7.pdb
: