Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLARQIAMELLDIQAVYLRPQQPFTWASGVKSPIYTDNRVTLSYPETRTLIENGFVKQIQKHFPNVDIIAGTATAGIPHGAIIADKMNLPFAYIRSKAKDHGVGNQIEGRVYSGQKMVIIEDLISTGGSVLEAVTAAQSQGIEVLGVVAIFTYQLAKAEQAFREADIPLVTLTDYNQLIKVAKVNGYITADQLVLLKKFKEDQMNWQS
3DEZ Chain:A ((35-243))
MTLAKDIARDLLDIKAVYLKPEEPFTW---IKSPIYTDNRITLSYPETRTLIENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMNLPLAYIRSKPK-----NQIEGRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYELPKATANFEKASVKLVTLSNYSELIKVAKVQGYIDADGLTLLKKFKENQETWQD
General information:
TITO was launched using:
RESULT:
Template:
3DEZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168627 for 1676 contacts (-100.6/contact) +
2D Compatibility (PS) -21866 + (NN) -7980 + (LL) -240
1D Compatibility (HY) -26000 + (ID) 7500
Total energy: -232213.0 ( -138.55 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_3DEZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DEZ-query.scw
PDB file :
Tito_Scwrl_3DEZ.pdb
: