Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNQIKIITGLTVATLSAVVGNVYAEDITPTAPVNEPQVSSETAKTPQVTESQVNSAKVTADQATSDVNAQKNVVNNAQNQKNQAQQKLVNATTTLNETQKLVQESTNQNQVQQTVDSAKQRLSQTEANQKITQTEQVKAQNQVNAQQTVVVNNEHDVATKTADVKQAQASVDTAKDALTNTIVNSDLNKAQSNVTTKTADVKTATDALTKAQATDKTLTNQKAKAQQIVDSAKQNLSAKDTQLSQANAEVNHHKFKTALGQSHYYNQRDNAWAGVYGGHTFASTGCVPSALAMVYSDLSNRTITPREIADYLYNNTDEFNKRFGGTSGKGIISATKAFGYVVTHLASKNAITEALKAGHHVVAAVQNNKFSPWGPQYSHEIVLRGSSNGNTYVYDPYNRDNNGFYSVDRIWNEQSRDSIDTAGVGVPFFAIMTKNMANALTKQSQALASQQVAQKQLNDAQAKATGLNAVTMQTPIAQANLIKAQSNLKDAQKRLAEAQASVKLANQDNVKKQADLTKAESKLKDAQKQLAAAQAKLTTSKTKLNQLKQVLAEASQQVAQANQDYKQAKDNLTQKTAYLTNLRNAQANLIKAQSDVAQAKDNLANKIAKLQREVAYLQELKTKAVDAQSQYQKVLSAYKSVLSAKASLKLAEEKARLDKKGHEAVAVVDETGKITSYITSKHKIEMKSLVATKTTDVKQVSVAKASVLPSTGDVKQVSVALLGMLLTFSGFLGIRKQSKKVIN |
4GKW Chain:A ((250-407)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EDKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRK----LGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQRF------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GKW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 24364 for 638 contacts (38.2/contact) +
2D Compatibility (PS) -17998 + (NN) -15307 + (LL) 39840
1D Compatibility (HY) -2800 + (ID) 1550
Total energy: 26549.0 ( 41.61 by residue)
QMean score : 0.645
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