Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRH-EHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
3HD2 Chain:A ((1-156))
-TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDAPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
3HD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129024 for 1128 contacts (-114.4/contact) +
2D Compatibility (PS) -15965 + (NN) -5467 + (LL) 744
1D Compatibility (HY) -14400 + (ID) 3300
Total energy: -167412.0 ( -148.41 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_3HD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HD2-query.scw
PDB file :
Tito_Scwrl_3HD2.pdb
: