Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKIYLNKCRFYGYHGAFSEEQTLGQVFQVDAVLSLDLAKASQTDDLIDTVHYGEVFDCIKNHVENEQYQLIEKLAGVIVEDIFLQFHPVQAITLKITKDNPPINGHYESVGIELERKRV
1U68 Chain:A ((3-119))
-DTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRENK
General information:
TITO was launched using:
RESULT:
Template:
1U68.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79252 for 814 contacts (-97.4/contact) +
2D Compatibility (PS) -12440 + (NN) -4928 + (LL) 208
1D Compatibility (HY) -12400 + (ID) 2950
Total energy: -111762.0 ( -137.30 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1U68.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U68-query.scw
PDB file :
Tito_Scwrl_1U68.pdb
: