Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNQEKMEKAIYQFLEALGENPDREGLKDTPKRVAKMYIEMFSGLNQDPKEQFTAVFSENHEEVVIVKDIPFYSMCEHHLVPFYGKAHIAYLPNDGRVTGLSKLARAFEVASKRPQLQERLTAQVAQALEDALAPKGIFVMIEAEHMCMTMRGIKKPGSKTITTVARGLYKDDRYERQEILSLIQKG
4UQF Chain:A ((18-200))
--DKQKIADAVKVILEAVGENPDREGLIDTPMRVARMYEEVFAGLKKDPSVHFDTIFEEQHEELVLVKDIRFSSMCEHHLVPFFGVAHVAYLPQNGRVAGLSKLARVVDDVSRRPQLQERITTTVAEIMMEKLKPLGVMVIMEAEHMCMTIRGVNKPGTKTITSAVRGAFKNDDKLRSEVLALIKH-
General information:
TITO was launched using:
RESULT:
Template:
4UQF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73055 for 1367 contacts (-53.4/contact) +
2D Compatibility (PS) -20548 + (NN) -11462 + (LL) 132
1D Compatibility (HY) -19200 + (ID) 5400
Total energy: -129533.0 ( -94.76 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_4UQF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UQF-query.scw
PDB file :
Tito_Scwrl_4UQF.pdb
: