Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHSSWHDLIKRELPNHYYNKINTFMDAVYESGIVYPPRDKVFNAIQITPLENVKVVIIGQDPYHGPQQAQGLSFSVPDNLPAPPSLQNILKELAEDIG---SRSHHDLTSWAQQGVLLLNACLTVPEHQANGHAGLIWEPFTDAVIKVVNQKETPVVFILWGGYARKKKSLIDNPIHHIIESPHPSPLSAYRGFFGSRPFSRTNHFLEEEGINEIDWLN
3UFM Chain:A ((27-238))
-----WQEALLPEFSAPYFHELTDFLRQERKEYTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAGQANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPLSE-QYFFGTRPFSKTNEALEKAGRGPVEWQL
General information:
TITO was launched using:
RESULT:
Template:
3UFM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120061 for 1678 contacts (-71.6/contact) +
2D Compatibility (PS) -22251 + (NN) -10636 + (LL) 352
1D Compatibility (HY) -20800 + (ID) 5900
Total energy: -179296.0 ( -106.85 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3UFM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UFM-query.scw
PDB file :
Tito_Scwrl_3UFM.pdb
: