Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKEEGLQVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK
3L7O Chain:A ((2-222))
-EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLGAFRLPVEVVQYGAERLFREFEKKGYKPSFREYDGVRFVTDMKNFIIDLDLGSIPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAG---VRILEA
General information:
TITO was launched using:
RESULT:
Template:
3L7O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111860 for 1890 contacts (-59.2/contact) +
2D Compatibility (PS) -23666 + (NN) -8530 + (LL) 20
1D Compatibility (HY) -29600 + (ID) 8350
Total energy: -181986.0 ( -96.29 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_3L7O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L7O-query.scw
PDB file :
Tito_Scwrl_3L7O.pdb
: