Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIAIGCDHIVTNEKMAVVDFLKSKGYEVQDYGTYDHVRTHYPIYGKKVGEAVASGKAELGICICGTGVGINNAVNKVPGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIEALLHAEYKPSEENKKLIAKIAHVESKN-DNQTNPDFFKEFLEKWDRGEYHD
4LFN Chain:D ((1-172))
MIIAIGNDHIVTMQKIEISNMLKDMGYTVIDEGTYDTHRTHYPIYGKKVAEDVADGRADLGIVMCGTGIGISTAADKNEGIRAAMCDDVTSAVYAREQLNANVLGIGGAVVGVHLIQDIVKAYLDATYKETPENKKLIDKIDNIAKPNPDQKDNPHFFDAELEKWAEGVYHD
General information:
TITO was launched using:
RESULT:
Template:
4LFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104784 for 1386 contacts (-75.6/contact) +
2D Compatibility (PS) -18503 + (NN) -7671 + (LL) 0
1D Compatibility (HY) -16800 + (ID) 4900
Total energy: -152658.0 ( -110.14 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_4LFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFN-query.scw
PDB file :
Tito_Scwrl_4LFN.pdb
: