Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQYRDIRKEVNLTTEELEQIEKIMNQANYRHFSPFVRDKLLAFDEEKLAIKTWFSLWQSQKLEQISRDVYEVLVIAKENKQVTRGHVSILLNCVQELITEVNQTHQLSTEFRDKYLG
2WVF Chain:A ((9-49))
-----SIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQR
General information:
TITO was launched using:
RESULT:
Template:
2WVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10487 for 183 contacts (-57.3/contact) +
2D Compatibility (PS) -4354 + (NN) -611 + (LL) 496
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -17856.0 ( -97.57 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_2WVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WVF-query.scw
PDB file :
Tito_Scwrl_2WVF.pdb
: