Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLNLLMKPKTSSKQKKEKTKKREVLPTTLNTLAYQGLFPNGLMQVSPDYFSQSYLLGDVNYQTVGLEEKEAIVEKYSNLINSLDDKTNFQLTIFNKKVNLEQFRKSVLYPLQEDGFDSYREELNRMMDSNLEAGENNFSAVKLISFGKSDQAPKLAYRSLSQIGEYFKSGLSEIEASFTLLTGEERVNNLADMLRGENHLPFTYKDLVLSGQTTKHFIAPTSISFKHKNHIEIDNRLLQIVYVRDYGMELGDKFIRELMQSDLEVVISLHAKGSTKSEAMKKLRTKKTLMESQKIGEQQKMARSGIYLDKVGHALESNIDEAEDLLKTMTQTGDKLFDTVFLIGFFADNEEQLKQSLDIIKQVAGSNDLIIDNLTYMQEAALNSLLPFGKNCLEGVSRSLLTSNIAVNSPWTSVDLQDAGGKFYGINQISSNIITID----RGKLNTPSGLILGTSGSGKGMATK-HEIIST-KLKEADKDTEIIIVDPENEYSVS-GQAFGGEIIDIAPDSRTFLNVLDLSDDNLDEDPVKVKSEFLLSWIGKLLDRKMDGREKSIIDRVTRLTYKHF--------------EEPSLVEWVFVLSQQP---EQEARDLALDMELYVEGS-LDIFSHKTTIQTDSHFLIYNVKKL---GDELKQIALMVIFDQIWNRVVKNQKLGKKTWIYFDEMQ-LLLLD-QFASDFFFKLWSRVRKYGATPTGITQNVETLL---LDANGRRIIANSEFMILLKQAKSDREELVHML-GLSKELEKYLVNPEKGAGLIKAGSTVVPFRNKIPHQT-KLFDIMSTDPDKMRT |
| 4AG6 Chain:A ((3-385)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGINDGSGIVLGKDR-DGGLVLVDIWKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQ------GSRVIIIDPEREYK-EMCRKLGGVWINCTG-GEGKINPLQVRLR--PQSPLALHIQTLRTFF-SLYLRDLTDTEKAALEDALVEVYKEAGITWDTDPRGVPNDKWPTVKELYEYCVKKAEENPETYGRLSVLLKRAAEGADSYLWAGPTAVEADSDFIVFDVHDLQNAEDQVKRAQYFNVLSFAWNILERDRR--ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQGEKDLEAITT-LMNLSEAEHDLLVNAKRGEGLFVAGTQRIHIKIEAAPYEMQY------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AG6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157111 for 2802 contacts (-56.1/contact) +
2D Compatibility (PS) -35882 + (NN) -13861 + (LL) 29588
1D Compatibility (HY) -20800 + (ID) 3950
Total energy: -202016.0 ( -72.10 by residue)
QMean score : 0.513
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