Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEEFLNTHNASILLSAANKSHYPQDDLPEVALAGRSNVGKSSFINTLLGRKNLARTSSKPGKTQLLNFYNIDDKLRFVDVPGYGYAKVSKTERAKWGKMIEEYLVTRDNLRVVVSLVDFRHDPSADDIQIYEFLKYYEIPVIIVATKADKIPRGKWNKHESSIKKKLNFDKKDHFIVFSSVDRTGLDESWDTILSEL
1SVI Chain:A ((5-193))
---------KSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINR-------------QTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI
General information:
TITO was launched using:
RESULT:
Template:
1SVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101475 for 1381 contacts (-73.5/contact) +
2D Compatibility (PS) -18853 + (NN) -4426 + (LL) 1152
1D Compatibility (HY) -20800 + (ID) 5250
Total energy: -149652.0 ( -108.36 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_1SVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVI-query.scw
PDB file :
Tito_Scwrl_1SVI.pdb
: