Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKVALIPEKCIACGLCQTY-SNIFDYQDDGIVKFSDTD-NLEKEVPNSDQDTVLAVKS-CPTKALTIL------------
1WTF Chain:A ((1-81))
PKYTIVDKETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEPFDGDPNKFE
General information:
TITO was launched using:
RESULT:
Template:
1WTF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53149 for 456 contacts (-116.6/contact) +
2D Compatibility (PS) -7168 + (NN) -5240 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -69407.0 ( -152.21 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_1WTF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WTF-query.scw
PDB file :
Tito_Scwrl_1WTF.pdb
: