Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIIGLTGGIASGKSTVTKIIRESGFKVIDADQVVHKLQAKGGKLYQALLEWLGPEILDADGELDRPKLSQMIFANPDNMKTSARLQNSIIRQELACQRDQLKQTEEIFFVDIPLLIEEKYIKWFDEIWLVFVDKEKQLQRLMARNNYSREEAELRLSHQMPLTDKKSFASLIINNNGDLITLKEQILDALQRL
1VHT Chain:A ((3-194))
LRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHY
General information:
TITO was launched using:
RESULT:
Template:
1VHT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79222 for 1399 contacts (-56.6/contact) +
2D Compatibility (PS) -21246 + (NN) -11461 + (LL) 184
1D Compatibility (HY) -10400 + (ID) 3100
Total energy: -125245.0 ( -89.52 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_1VHT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHT-query.scw
PDB file :
Tito_Scwrl_1VHT.pdb
: