Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEIVTKAQERFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEMTANKEKELLEV
4GFQ Chain:A ((25-209))
MGQQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV
General information:
TITO was launched using:
RESULT:
Template:
4GFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53512 for 1317 contacts (-40.6/contact) +
2D Compatibility (PS) -20452 + (NN) -9750 + (LL) 0
1D Compatibility (HY) -18400 + (ID) 5400
Total energy: -107514.0 ( -81.64 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_4GFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GFQ-query.scw
PDB file :
Tito_Scwrl_4GFQ.pdb
: