Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPKYQRILIKLSGEALAGDKGVGIDIPTVQSIAKEIAEVHNSGVQIALVIGGGNLWRGEPAAEAGMDRVQADYTGMLGTVMNALVMADSLQQYGVDTRVQTAIPMQTVAEPYVRGRALRHLEKDRIVVFGAGIGSPYFSTDTTAALRAAEIEAEAILMAKNGVDGVYNADPKKDANAVKFDELTHVEVIKRGLKIMDATASTISMDNDIDLVVFNMNETGNIKRVVLGEQIGTTVSNKASE
1Z9D Chain:A ((4-241))
-EPKYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK---
General information:
TITO was launched using:
RESULT:
Template:
1Z9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177055 for 1991 contacts (-88.9/contact) +
2D Compatibility (PS) -26162 + (NN) -12421 + (LL) 428
1D Compatibility (HY) -30800 + (ID) 11150
Total energy: -257160.0 ( -129.16 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_1Z9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z9D-query.scw
PDB file :
Tito_Scwrl_1Z9D.pdb
: