Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGMIIPVVISVYEDKSFDFITKTPPAAVLLKKAAGVEKGSGEPNKTKVATVTRAQVQEIAETKMPDLNAANLESAMRMIEGTARSMGFTVTD
2JQ7 Chain:A ((8-141))
-------QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD
General information:
TITO was launched using:
RESULT:
Template:
2JQ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72863 for 910 contacts (-80.1/contact) +
2D Compatibility (PS) -15346 + (NN) -12848 + (LL) 840
1D Compatibility (HY) -14800 + (ID) 4850
Total energy: -119867.0 ( -131.72 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_2JQ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JQ7-query.scw
PDB file :
Tito_Scwrl_2JQ7.pdb
: