Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIISKHLSVSYDNNLVLEDINLRLEGSGIIGILGPNGAGKSTLMKALLGLVD-STGESGIGG---DLLPLMGR----VAYVEQKTNIDYQFPITVGECVSLGLYKERGL-FKRLSKTD-WEKVSRVIDQVGLRGFENRPINALSGGQFQRMLMARCLVQEADYIFLDEPFVGIDSISEQIIVNLLKKLSKAGKLILVVHHDLSKV----DHYFDQVIILNRHLIACGPIDQAFTRENLSAAYGDAILLGQGD
4WBS Chain:A ((40-275))
-LVVRNLKKRYGSRTVVKDVSLDVKSGEVVGLLGPNGAGKTTSFYMIVGLVPLDAGEIDLDGKSISLLPIHKRASLGLSYLPQEASVFRK--LSVEENIRAVLELQVGDDGKRLSKDAIASRTEALLDELQISHLRENPALSLSGGERRRVEIARALATNPSFILLDEPFAGVDPIAVLEIQKIVKFLKQRNIGVLITDHNVRETLGICDHAY---IISDGSVLAAGAPGDIIENESVRRVYLGEHFRM---
General information:
TITO was launched using:
RESULT:
Template:
4WBS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -200062 for 1699 contacts (-117.8/contact) +
2D Compatibility (PS) -23814 + (NN) -8462 + (LL) 332
1D Compatibility (HY) -14400 + (ID) 3400
Total energy: -249806.0 ( -147.03 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_4WBS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WBS-query.scw
PDB file :
Tito_Scwrl_4WBS.pdb
: