Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVKDFMTKK--LVYVSPDTTVAEAADLLREHHLRRLPVVEND-QLLGLV---------TEGTMAEAQPSKATSLSIYEMNYLLNKTK---IRDIMIKDIVTVSQYASLEDAIYLMMSRKIGVLPVVD-NGQLYGIITDRDVFKAFLEIAGYGQEGYRLVILADEGIGVLSKVLNRLSSANLSVKRLVIIERKAGKKAVEIQLEGYADKDVLKQELVFDDVIVETLEKTVKKPLS
4GQV Chain:A ((77-229))
--VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALD-----------------------------GKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIK-------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4GQV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93972 for 733 contacts (-128.2/contact) +
2D Compatibility (PS) -11572 + (NN) -5674 + (LL) 8996
1D Compatibility (HY) -12000 + (ID) 2350
Total energy: -116572.0 ( -159.03 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4GQV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GQV-query.scw
PDB file :
Tito_Scwrl_4GQV.pdb
: