Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQSIEKVHDDAERDRWMSAQETLDYGFIDAIMENNNLQ
4EMM Chain:V ((4-190))
-IPTVIE-------AYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPL-------------IAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE---
General information:
TITO was launched using:
RESULT:
Template:
4EMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122427 for 1313 contacts (-93.2/contact) +
2D Compatibility (PS) -18050 + (NN) -5034 + (LL) 160
1D Compatibility (HY) -22400 + (ID) 5550
Total energy: -173301.0 ( -131.99 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_4EMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EMM-query.scw
PDB file :
Tito_Scwrl_4EMM.pdb
: