Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MIIRN--GCLEDLQQVISIERINFSEAEAA-----SKKAMQERLMIMTDT-FLVAEINGRLAGYIEGPVIKGRYLTDDLFHKVSEIPVREGGFIGITSLSIHPDFKGQGIGTALLAAMKDLVVSQER-DGISLTC--HDDLISFYEMNGFKDEGESDSQHGGSLWYNMIWNNPTRSIC------
1CJW Chain:A ((1-166))
HTLPANEFRCLT--PEDAAGVFEIEREAF--ISVSGNCPLNLDEVQHFLTLC-PELSLGWFVEGRLVAFIIGSLWDEERLTQESLALHRP----RGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCED--ALVPFYQRFGFHPAGPCAIVVG------------SLTFTEMHCSL
General information:
TITO was launched using:
RESULT:
Template:
1CJW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57953 for 994 contacts (-58.3/contact) +
2D Compatibility (PS) -15916 + (NN) -8925 + (LL) 748
1D Compatibility (HY) -6000 + (ID) 1900
Total energy: -89946.0 ( -90.49 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_1CJW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CJW-query.scw
PDB file :
Tito_Scwrl_1CJW.pdb
: