Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGTMILIAIIALFVIWLIVAYNSLVRSRMHTKESWSQIDVQLKRRNDLIPNLIETVKGYAAYEGKTLEKIAELRAQVAKANTPAEAM-------TASNELTRQLSSILAVAENYPDLKANNSFVKLQEELTNTENKISYSRQLYNTTTSNYNVKLETFPSNIVGKLFGFKPSQFLETPEEEKEVPKVSFDF |
3SDP Chain:B ((29-114)) | ------------------------------------------KHHNTYVVNLNNLVPGTPEFEGKTLEEIVK-SSSGGIFNNAAQVWNHTFYWNCLSPDAGGQPTGALADAIN----AAFGSFDKFKEEFTKTSVGTFGSGWAWLVKADGSLALCSTIGAGAPLTSGDTPLLTCDVWEHAYYIDYRNLRPK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 16692 for 412 contacts (40.5/contact) +
2D Compatibility (PS) -8308 + (NN) -774 + (LL) 5212
1D Compatibility (HY) -1600 + (ID) 1450
Total energy: 9772.0 ( 23.72 by residue)
QMean score : 0.138
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