Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATYETFAAVYDAVMDDTLYDKWTDFSLRHFPKGKKKLLELACGTGIQSVRFSQAGYAVTGLDLSGDMLKLAKKRATSAHQSIQFIEGNMLDLSNVGKYDLITCYSDSICYMQDEVEVGDVFIEVYKALEENGVFIFDVHSTYQTDKVFPGYSYHENADDFAMVWDTYEDDAPHSIVHELTFFVQEEDGRFTRHDEVHEERTYDILTYDILLEQAGFKDVKVYADFEDKKPTATSARWFFVAHK
3D2L Chain:A ((6-242))
-----QFAYVYDELMQDVPYPEWVAWVLEQVEPGKR-IADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK
General information:
TITO was launched using:
RESULT:
Template:
3D2L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131798 for 1934 contacts (-68.1/contact) +
2D Compatibility (PS) -25156 + (NN) -5512 + (LL) 492
1D Compatibility (HY) -18400 + (ID) 4500
Total energy: -184874.0 ( -95.59 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_3D2L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D2L-query.scw
PDB file :
Tito_Scwrl_3D2L.pdb
: