Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQLDPDLKKWGNNIWHGLVGIYKIQEDLAI-KDQDILAAIAKHTVGSAQMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVSFLASKAQPIYPKTIETYNAYIPYLD
2OGI Chain:A ((4-196))
--YKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVGIYKIQEDLAIKD-QDILAAIAKHTVGSAQMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVAFLASKAQPIYPKTIETYNAYIPYLD
General information:
TITO was launched using:
RESULT:
Template:
2OGI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97517 for 1562 contacts (-62.4/contact) +
2D Compatibility (PS) -20646 + (NN) -10290 + (LL) 184
1D Compatibility (HY) -26400 + (ID) 9450
Total energy: -164119.0 ( -105.07 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_2OGI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OGI-query.scw
PDB file :
Tito_Scwrl_2OGI.pdb
: