Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIFDTHTHLNVENFEGKIDEEINLASELGVTKMNVVGFDQDTISKSLELSSQYAQVYSTIGWHPTEAGSYDDNIESMIISHLENPKVIALGEIGLDYYWMEDPKDIQIEVFKRQIELSKEYNLPFVVHTRDALEDTYEVIKESGVGPFGGIMHSFSGSLEMAQKFIDL-GMMISFSGVVTFKKALDVQEAARELPLDKILVETDAPYLAPVPKRGRENKTAYTRYVVEKIAELRGITVEEVAEATYQNAVRIFRLDEKN
2GZX Chain:A ((2-254))
---LIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGIIGWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKRLKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVTFKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN-----
General information:
TITO was launched using:
RESULT:
Template:
2GZX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137657 for 2232 contacts (-61.7/contact) +
2D Compatibility (PS) -27614 + (NN) -12441 + (LL) 664
1D Compatibility (HY) -19200 + (ID) 5550
Total energy: -201798.0 ( -90.41 by residue)
QMean score : 0.670
(partial model without unconserved sides chains):
PDB file :
Tito_2GZX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GZX-query.scw
PDB file :
Tito_Scwrl_2GZX.pdb
: