Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLKQAFIENDSIRLKLSASDWKEAIKLSIDPLIESGAVDAEYYDAIIESTEEFGPYYILMPGMAMPHARPEAGVKRDAFSLITLTEPVVFPDGKEVSVLLALAATSSAIHTSVAIPQIIALFELENSIQRLTECQEAKEVLAMVEESKNSPYLEGLDLES
3BJV Chain:A ((1-156))
MNLAQAFKENHSIRLGLTAKDWKEAVKLSVTPLIESGAVKPEYYNAIIESTESYGPYYILMPGMAMPHARPEAGVQRDAFSLVTLTEPVTFTDGKEVQVLLALAATSSKIHTSVAIPQIIALFELDHSIERLVNCKTPEEVLAMVEESKSSPYLEG-----
General information:
TITO was launched using:
RESULT:
Template:
3BJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119401 for 1251 contacts (-95.4/contact) +
2D Compatibility (PS) -16893 + (NN) -7528 + (LL) 352
1D Compatibility (HY) -20800 + (ID) 6300
Total energy: -170570.0 ( -136.35 by residue)
QMean score : 0.676
(partial model without unconserved sides chains):
PDB file :
Tito_3BJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BJV-query.scw
PDB file :
Tito_Scwrl_3BJV.pdb
: