Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKLADQAYEFVRDAAANDAVILFVGTKKQAAEAVAEEAKRAGQYFINHRWLGGTLTNWGTIQKRIARLKEIKRMEEEGTFELLPKKEVALLNKQRARLEKFLGGIEDMPRIPDVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNADPDDIDVIIPANDDAIRAVKLITSKLADAVIEGR------QGEDADVDFAQEAQADSIEEIVEVVEGSNND
4TOI Chain:A ((5-259))
-ATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAEES-LYFQGESFAQLFEESLKEIETRIVR
General information:
TITO was launched using:
RESULT:
Template:
4TOI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122378 for 1921 contacts (-63.7/contact) +
2D Compatibility (PS) -27947 + (NN) -19791 + (LL) 132
1D Compatibility (HY) -23200 + (ID) 6150
Total energy: -199334.0 ( -103.77 by residue)
QMean score : 0.716
(partial model without unconserved sides chains):
PDB file :
Tito_4TOI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TOI-query.scw
PDB file :
Tito_Scwrl_4TOI.pdb
: