Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
3SW8 Chain:P ((2-203))
-SAIERITKAAHLIDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNI---------EAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE
General information:
TITO was launched using:
RESULT:
Template:
3SW8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100564 for 1549 contacts (-64.9/contact) +
2D Compatibility (PS) -20268 + (NN) -2934 + (LL) 32
1D Compatibility (HY) -28000 + (ID) 8350
Total energy: -160084.0 ( -103.35 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_3SW8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SW8-query.scw
PDB file :
Tito_Scwrl_3SW8.pdb
: