Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKSKILLQLMQGKIVAVIRGNSQEEAFQAAQACIKGGISAIEIAYTNSKASQVIEQLVTQYTNQEQVVVGAGTVLDSETARMAILAGAKFIVSPAFNLQTAKLCNRYAIPYLPGCMTLSEVTTALEAGCEIIKIFPGGTLGTSFISSLKAPLPQVQIMVTGGVNLTNAKDWFLSGVTAIGIGGEFNKLAALGEFDKITEMAKQYKIQLNLN
1VLW Chain:A ((9-196))
-----------KHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKEL--SFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK----GTPDEVREKAKAFVEKIRGC
General information:
TITO was launched using:
RESULT:
Template:
1VLW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163175 for 1640 contacts (-99.5/contact) +
2D Compatibility (PS) -20740 + (NN) -9993 + (LL) 2456
1D Compatibility (HY) -16000 + (ID) 3900
Total energy: -211352.0 ( -128.87 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_1VLW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VLW-query.scw
PDB file :
Tito_Scwrl_1VLW.pdb
: