Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFAKRLRELRQLNNITQIEMANKLGLNRVTYTNYEREKSEPSISTLKEIATIFNVSIDYLIDFEDDTKGKNN--RKKLLLSL----EAELKKINRSFELEIKSLLIDLLNLIKTNQLSSCDVTKWLIDINEKDLECSSEILRFISEMPKEFEPIIDIIEIYQALNKNDE
3OP9 Chain:A ((10-101))
--FAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQE--VWNDLSLKQWLLSLNLRSEEEIAKIKILVDTVETLYPN---------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3OP9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24808 for 478 contacts (-51.9/contact) +
2D Compatibility (PS) -9041 + (NN) -2528 + (LL) 5436
1D Compatibility (HY) -8400 + (ID) 1400
Total energy: -40741.0 ( -85.23 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_3OP9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OP9-query.scw
PDB file :
Tito_Scwrl_3OP9.pdb
: