Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFINNYTLKIG--NRILLENTNLDFEEGEINHLLGRNGSGKSQLAKDF--IINRGNYFSNDIYED-----TLIISSYSNLPSDVTI-----NDLERTIPW---KLSKEIYQLLNINQISKT----------VKLKQLSDGQKQKVKLLVLLSLDKHIIILDEITNALDKKSVDEINVFLQNYIQYYPEKIIINISHDINNIRSLKGNYFLIDNQKICKVDTLDDAISWYLGE |
3GD7 Chain:A ((20-244)) | MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYPADR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GD7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75509 for 1454 contacts (-51.9/contact) +
2D Compatibility (PS) -21222 + (NN) -7435 + (LL) 404
1D Compatibility (HY) -9600 + (ID) 2100
Total energy: -115462.0 ( -79.41 by residue)
QMean score : 0.448
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