Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLGTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASL-SKPFLEVMNEFNAKV
4YLY Chain:B ((1-189))
MKCIVGLGNIGKRFELTRHNIGFEVVDYILEKNNFSLDKQKFKGAYTIERMNGDKVLFIEPMTMMNLSGEAVAPIMDYYNVNPEDLIVLYDDLDLEQGQVRLRQKGSAGGHNGMKSIIKMLGTDQFKRIRIGVGRP-NGMTVPDYVLQRFSNDEMVTMEKVIEHAARAIEKFVETSRFDHVMNEFNGEV
General information:
TITO was launched using:
RESULT:
Template:
4YLY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112952 for 1557 contacts (-72.5/contact) +
2D Compatibility (PS) -20071 + (NN) -7274 + (LL) 192
1D Compatibility (HY) -20400 + (ID) 5000
Total energy: -165505.0 ( -106.30 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_4YLY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YLY-query.scw
PDB file :
Tito_Scwrl_4YLY.pdb
: