Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDDSIGVKRHWIWQGAFVLILAGVITKILSAVYRVPFQNIVGDVGFYIYQQVYPFLGIAVML-S--TSGFPVIISKLMNDYSEKNHHTILKISALFLSLIGILLFLCLYLGAVPIALFMG-DS----HLAVLIQVAAYAFLLFPFVALLRGGFQGRHEMLPSALSQMTEQFLRVAVLLGLSFWLVKKGASLYTAGAAAASGSLAGSLVALIILGF-FWFKTKRDNQTDRQNENVITTKELTKKLLLYSVTICVSSLLLLFIQLVDALNLYALLSGGEASEEAKCLKGIYDRGQPLLQLGSVFAVSIATSLVPYISMAVKNKELKIMKEKITSSLKLCLVLGTGASAGLICILKPVNIMLFQNGE-----GTGALQVFSCSILFASLAVTAAAVLQGAGYTVFPAIAVGA-GVAVKWVLNTLLVP--RYGIEGASLATAASFAAVAGLNLYQLRQKEWLDKLRGVLIPIIGSALLMSAVLLAYTRLWTFLFPATGRGAAVIESLSAVAIGGAVFIYCMMRLGIFTDEELNSVPFGSKLSKFMRRREQNGG |
3W4T Chain:A ((13-447)) | ----RGDPKKAIVRLSIAMMIGMSVQTLYNLADGIW-VSGLGPESLAAVGLFFPVFMGIIALAAGLGVGTSSAIARRIGARDKEGADNVAVHSLILSLILGVTITITMLPAIDSLFRSMGAKGEAVELAIEYARVLLAGAFIIVFNNVGNGILRGEGDANRAMLAMVLGSGLNIVLDPIFIYTL-------GFGVVGAAYATLLSMVVTSLFIAYWLFVKRDTYVDIT--LRDFSPSREILKDILRVGLPSSLSQLSMSIAMFFLNSVAITAGG--------ENGVAVFTSAWRITMLGIVPILGMAAATTSVTGAAYGERNVEKLETAYLYAIKIAFMIELAVVAFIMLFAPQVAYLFTY---VIKGDLISALRTLPVFLVLTPFGMMTSAMFQGIGEGEKSLILTIFRTLVMQVGFAYIFVHYTTLGLRGVWIGIVIGNMVAAIVGFLWGRMR---------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -348486 for 3580 contacts (-97.3/contact) +
2D Compatibility (PS) -42480 + (NN) -14089 + (LL) 8332
1D Compatibility (HY) -18400 + (ID) 2400
Total energy: -417523.0 ( -116.63 by residue)
QMean score : 0.313
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