Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNGHLNQILLITDGCSNHGEDPLAMAAFAKEQGITVNVIGIMEENQIDPEAMKEVEGIALAGGGVHQVVYASQLSQTVQMVTKKAMTQTLQGVVNQELKQILGKNVEMEELSPEKRGEVMEVVDELGETVHLQVLVLVDTSASMAPKLPTVKEALIDLSVSLNSRIGNNEFAMCIFPGKKQEVELVLN-WTPKLQSLSTLFAKLSTGGITPTGPAIREATLQFEKIRSRRGMLADDERRFDEFGM
3RAG Chain:A ((5-227))
TREATIRQILVITDGCSNIGPDPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQPADISATAQMMTHQTMQMTLQQVVNQELLAVMGK--STEDLPPADRARVMQVVEKLEDEVALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSE-VNVAALEAELVARGGTPTGPAIDHAADLLLS--------------------
General information:
TITO was launched using:
RESULT:
Template:
3RAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114507 for 1881 contacts (-60.9/contact) +
2D Compatibility (PS) -24250 + (NN) -10886 + (LL) 1600
1D Compatibility (HY) -17200 + (ID) 4750
Total energy: -169993.0 ( -90.37 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3RAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RAG-query.scw
PDB file :
Tito_Scwrl_3RAG.pdb
: