Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIYVNGRYMEEKDAVLSPFDHGFLYGIGVFETFRLYEG-----CPFLLDWHIERLERALKDLQIEYTVSKHEILEMLDKLLKLNDIKDGNARVRLNISAGISDKGFVAQTYDKPTVLCFVNQLKPESL-PLQKEGKVLSIRR-N---TPEGSFRLKSH-HYLNNMYAKREIG-NDPRVEGIFLTEDGAVAEGIISNVFWRKGRCIYTPSLDTGILDGVTRRFIIENAKDIGLELKTGRYELEALLTADEAWMTNSVLEIIPFTKIEEVNYG-SQSGEATSALQLLYKKEIKNMIHEKGGRAWRSTQ |
3U0G Chain:A ((30-320)) | KIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVRENKL--ESCYLRPIIWIGSEKLGVSAKG-NTIHVAIAAWPWG----EEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEATADGY-DEALLLDVDGYVSEGSGENFFLVNRGKLYTPDLA-SCLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSAFFDVVNGKSAK---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U0G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151342 for 2185 contacts (-69.3/contact) +
2D Compatibility (PS) -29830 + (NN) -12498 + (LL) 708
1D Compatibility (HY) -10800 + (ID) 3600
Total energy: -207362.0 ( -94.90 by residue)
QMean score : 0.536
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